C. G. Farmer and Kent Sanders report the same system in Alligators and say the observation suggests that this breathing pattern dates back to the basal archosaurs of the Triassic and their descendants, including both dinosaurs and pterosaurs.
Speaking an outsider/know-next-to-nothing, I think it has long been assumed that pterosaurs would only have been capable of flight if they had a unidirectional breathing system. The new site pterosaur.net has a little information about this (under anatomy).
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